PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25396.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bZIP
Protein Properties Length: 161aa    MW: 17753.6 Da    PI: 10.3684
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25396.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1521.5e-1679139161
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 eke kr +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l++e + l+ 
  KFK25396.1  79 EKETKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELDERLSTLQNENQMLRH 139
                 899*****************************************************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-1579143IPR004827Basic-leucine zipper domain
PfamPF001703.7E-1579140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.74881144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-1783143No hitNo description
SuperFamilySSF579595.81E-1483141No hitNo description
CDDcd147042.13E-1484135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MQEQATSSLA ASSLPSSSER SSSSAPHLEI KEGVESDEEI RRVPEFAGKE TSGSAATGQE  60
RTQITVGESQ RKRGRSTAEK ETKRLKRLLR NRVSAQQARE RKKAYLSELE NRVKDLENKN  120
SELDERLSTL QNENQMLRHI LKNTTGNKRG GGGGSNADAS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A5e-20104143342Transcription factor HY5
2oqq_B5e-20104143342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052953e-97AB005295.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAB0054563e-97AB005456.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAK2293623e-97AK229362.1 Arabidopsis thaliana mRNA for bZip transcription factor HY5 / AtbZip56, complete cds, clone: RAFL16-60-N08.
GenBankBT0255193e-97BT025519.1 Arabidopsis thaliana At5g11260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873502.12e-82hypothetical protein ARALYDRAFT_909087
SwissprotO246467e-82HY5_ARATH; Transcription factor HY5
TrEMBLA0A087G6941e-111A0A087G694_ARAAL; Uncharacterized protein
STRINGscaffold_601144.15e-82(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.16e-73bZIP family protein